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\Amelaye\BioPHP\Domain\Sequence\Entity Sequence

Class Sequence

Summary

Methods
Properties
Constants
getPrimAcc
setPrimAcc
getEntryName
setEntryName
getSeqLength
setSeqLength
getStart
setStart
getEnd
setEnd
getMolType
setMolType
getDate
setDate
getSource
setSource
getSequence
setSequence
getDescription
setDescription
getOrganism
setOrganism
getFragment
setFragment
No public properties found
No public constants found
No protected methods found
No protected properties found
No protected constants found
No private methods found
primAcc
entryName
seqLength
start
end
molType
date
source
sequence
description
organism
fragment
No private constants found

Properties

$primAcc

$primAcc : string

Type

string —

$entryName

$entryName : string

Type

string —

$seqLength

$seqLength : int|null

Type

int|null —

$start

$start : int|null

Type

int|null —

$end

$end : int|null

Type

int|null —

$molType

$molType : string|null

Type

string|null —

$date

$date : string|null

The date as its record writes it, e.g. "21-JUL-1986" : a flat-file date carries no time zone and its precision varies by format, so it is stored as read rather than mapped to a date column, which Doctrine would expect to hydrate as a DateTime.

Type

string|null —

$source

$source : string|null

Type

string|null —

$sequence

$sequence : string

Type

string —

$description

$description : string|null

Type

string|null —

$organism

$organism : array|null

Type

array<string|int, mixed>|null —

$fragment

$fragment : int|null

Type

int|null —

Methods

getPrimAcc()

getPrimAcc() : string

Returns

string —

setPrimAcc()

setPrimAcc(string  $primAcc) : void

Parameters

string $primAcc

Returns

void —

getEntryName()

getEntryName() : string

Returns

string —

setEntryName()

setEntryName(string  $entryName) : void

Parameters

string $entryName

Returns

void —

getSeqLength()

getSeqLength() : int|null

Returns

int|null —

setSeqLength()

setSeqLength(int|null  $seqLength) : void

Parameters

int|null $seqLength

Returns

void —

getStart()

getStart() : int|null

Returns

int|null —

setStart()

setStart(int|null  $start) : void

Parameters

int|null $start

Returns

void —

getEnd()

getEnd() : int|null

Returns

int|null —

setEnd()

setEnd(int|null  $end) : void

Parameters

int|null $end

Returns

void —

getMolType()

getMolType() : string|null

Returns

string|null —

setMolType()

setMolType(string|null  $molType) : void

Parameters

string|null $molType

Returns

void —

getDate()

getDate() : string|null

Returns

string|null —

setDate()

setDate(string|null  $date) : void

Parameters

string|null $date

Returns

void —

getSource()

getSource() : string|null

Returns

string|null —

setSource()

setSource(string|null  $source) : void

Parameters

string|null $source

Returns

void —

getSequence()

getSequence() : string

Returns

string —

setSequence()

setSequence(string  $sequence) : void

Parameters

string $sequence

Returns

void —

getDescription()

getDescription() : string|null

Returns

string|null —

setDescription()

setDescription(string|null  $description) : void

Parameters

string|null $description

Returns

void —

getOrganism()

getOrganism() : array|null

Returns

array|null —

setOrganism()

setOrganism(array|null  $organism) : void

Parameters

array|null $organism

Returns

void —

getFragment()

getFragment() : int|null

Returns

int|null —

setFragment()

setFragment(int|null  $fragment) : void

Parameters

int|null $fragment

Returns

void —