MoleculeAwareScoringInterface
in
Interface MoleculeAwareScoringInterface - implemented by a scoring that only means something for some molecules (PAM250 for proteins, the IUPAC nucleotide scoring for DNA and RNA). The aligners refuse a sequence it does not support, instead of scoring A, C, G and T as alanine, cysteine, glycine and threonine. A scoring that does not implement it is taken to suit any molecule. Kept apart from SubstitutionScoringInterface, so that interface keeps its single method.
Tags
Table of Contents
Methods
- supportsMolType() : bool
Methods
supportsMolType()
public
supportsMolType(string $sMolType) : bool
Parameters
- $sMolType : string
-
"DNA", "RNA" or "PROTEIN", as AbstractMolecularSequence::getMolType()