SubstitutionScoringInterface
in
Interface SubstitutionScoringInterface - lets a pairwise aligner stay ignorant of how two symbols are scored against each other, whether by a flat match/mismatch rule or a substitution matrix such as PAM250.
Tags
Table of Contents
Methods
- score() : int
Methods
score()
public
score(string $sFirstSymbol, string $sSecondSymbol) : int
Parameters
- $sFirstSymbol : string
-
A single symbol, already validated by its owning AbstractMolecularSequence
- $sSecondSymbol : string
-
A single symbol, already validated by its owning AbstractMolecularSequence