PrositeDbRef
in package
implements
PrositeDbRefInterface
Class PrositeDbRef
Tags
Table of Contents
Interfaces
- PrositeDbRefInterface
- Interface PrositeDbRefInterface
Properties
- $accession : string
- $category : string
- The PROSITE code of the match : T true positive, N false negative (a member of the family the motif misses), P potential (a member known from a fragment lacking the motif's region), ? unknown, F false positive.
- $entryName : string
- $truePositive : bool
Methods
- getAccession() : string
- getCategory() : string
- The PROSITE code of the match : T true positive, N false negative, P potential, ? unknown, F false positive.
- getEntryName() : string
- isFamilyMember() : bool
- Tells whether the sequence belongs to the family the motif describes, detected (T) or not (N, P) - unlike isTruePositive(), which a missed member fails too.
- isTruePositive() : bool
- setAccession() : void
- setCategory() : void
- setEntryName() : void
- setTruePositive() : void
Properties
$accession
private
string
$accession
= ""
$category
The PROSITE code of the match : T true positive, N false negative (a member of the family the motif misses), P potential (a member known from a fragment lacking the motif's region), ? unknown, F false positive.
private
string
$category
= ""
$entryName
private
string
$entryName
= ""
$truePositive
private
bool
$truePositive
= false
Methods
getAccession()
public
getAccession() : string
Return values
stringgetCategory()
The PROSITE code of the match : T true positive, N false negative, P potential, ? unknown, F false positive.
public
getCategory() : string
Return values
string —T, N, P, ? or F
getEntryName()
public
getEntryName() : string
Return values
stringisFamilyMember()
Tells whether the sequence belongs to the family the motif describes, detected (T) or not (N, P) - unlike isTruePositive(), which a missed member fails too.
public
isFamilyMember() : bool
Return values
boolisTruePositive()
public
isTruePositive() : bool
Return values
boolsetAccession()
public
setAccession(string $accession) : void
Parameters
- $accession : string
setCategory()
public
setCategory(string $category) : void
Parameters
- $category : string
setEntryName()
public
setEntryName(string $entryName) : void
Parameters
- $entryName : string
setTruePositive()
public
setTruePositive(bool $truePositive) : void
Parameters
- $truePositive : bool