Documentation

PrositeDbRefInterface

Interface PrositeDbRefInterface

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author

Amélie DUVERNET aka Amelaye amelieonline@gmail.com

Table of Contents

Methods

getAccession()  : string
getCategory()  : string
The PROSITE code of the match : T true positive, N false negative, P potential, ? unknown, F false positive.
getEntryName()  : string
isFamilyMember()  : bool
Tells whether the sequence belongs to the motif's family : T, N or P.
isTruePositive()  : bool
setAccession()  : void
setCategory()  : void
setEntryName()  : void
setTruePositive()  : void

Methods

getCategory()

The PROSITE code of the match : T true positive, N false negative, P potential, ? unknown, F false positive.

public getCategory() : string
Return values
string

isFamilyMember()

Tells whether the sequence belongs to the motif's family : T, N or P.

public isFamilyMember() : bool
Return values
bool

setAccession()

public setAccession(string $accession) : void
Parameters
$accession : string

setEntryName()

public setEntryName(string $entryName) : void
Parameters
$entryName : string

setTruePositive()

public setTruePositive(bool $truePositive) : void
Parameters
$truePositive : bool
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