Documentation

Sequence
in package

Class Sequence

Tags
author

Amélie DUVERNET aka Amelaye amelieonline@gmail.com

Attributes
#[Entity]
#[Index]
$name: "locus_name"
$columns: ["entry_name", "mol_type"]
#[Table]
$name: "sequence"

Table of Contents

Properties

$date  : string|null
The date as its record writes it, e.g. "21-JUL-1986" : a flat-file date carries no time zone and its precision varies by format, so it is stored as read rather than mapped to a date column, which Doctrine would expect to hydrate as a DateTime.
$description  : string|null
$end  : int|null
$entryName  : string
$fragment  : int|null
$molType  : string|null
$organism  : array<string|int, mixed>|null
$primAcc  : string
$seqLength  : int|null
$sequence  : string
$source  : string|null
$start  : int|null

Methods

getDate()  : string|null
getDescription()  : string|null
getEnd()  : int|null
getEntryName()  : string
getFragment()  : int|null
getMolType()  : string|null
getOrganism()  : array<string|int, mixed>|null
getPrimAcc()  : string
getSeqLength()  : int|null
getSequence()  : string
getSource()  : string|null
getStart()  : int|null
setDate()  : void
setDescription()  : void
setEnd()  : void
setEntryName()  : void
setFragment()  : void
setMolType()  : void
setOrganism()  : void
setPrimAcc()  : void
setSeqLength()  : void
setSequence()  : void
setSource()  : void
setStart()  : void

Properties

$date

The date as its record writes it, e.g. "21-JUL-1986" : a flat-file date carries no time zone and its precision varies by format, so it is stored as read rather than mapped to a date column, which Doctrine would expect to hydrate as a DateTime.

private string|null $date = null
Attributes
#[Column]
$type: "string"
$length: 11
$nullable: true

$description

private string|null $description = null
Attributes
#[Column]
$type: "text"
$nullable: true

$end

private int|null $end = null
Attributes
#[Column]
$type: "integer"
$length: 11
$nullable: true

$entryName

private string $entryName = ""
Attributes
#[Column]
$type: "string"
$length: 50
$nullable: false

$fragment

private int|null $fragment = null
Attributes
#[Column]
$type: "integer"
$length: 1
$nullable: true

$molType

private string|null $molType = null
Attributes
#[Column]
$type: "string"
$length: 20
$nullable: true

$organism

private array<string|int, mixed>|null $organism = null
Attributes
#[Column]
$type: "json"
$nullable: true

$primAcc

private string $primAcc = ""
Attributes
#[Column]
$type: "string"
$length: 50
$nullable: false
#[Id]

$seqLength

private int|null $seqLength = null
Attributes
#[Column]
$type: "integer"
$length: 11
$nullable: true

$sequence

private string $sequence = ""
Attributes
#[Column]
$type: "text"
$nullable: false

$source

private string|null $source = null
Attributes
#[Column]
$type: "string"
$nullable: true

$start

private int|null $start = null
Attributes
#[Column]
$type: "integer"
$length: 11
$nullable: true

Methods

getDate()

public getDate() : string|null
Return values
string|null

getDescription()

public getDescription() : string|null
Return values
string|null

getEnd()

public getEnd() : int|null
Return values
int|null

getEntryName()

public getEntryName() : string
Return values
string

getFragment()

public getFragment() : int|null
Return values
int|null

getMolType()

public getMolType() : string|null
Return values
string|null

getOrganism()

public getOrganism() : array<string|int, mixed>|null
Return values
array<string|int, mixed>|null

getPrimAcc()

public getPrimAcc() : string
Return values
string

getSeqLength()

public getSeqLength() : int|null
Return values
int|null

getSequence()

public getSequence() : string
Return values
string

getSource()

public getSource() : string|null
Return values
string|null

getStart()

public getStart() : int|null
Return values
int|null

setDate()

public setDate(string|null $date) : void
Parameters
$date : string|null

setDescription()

public setDescription(string|null $description) : void
Parameters
$description : string|null

setEnd()

public setEnd(int|null $end) : void
Parameters
$end : int|null

setEntryName()

public setEntryName(string $entryName) : void
Parameters
$entryName : string

setFragment()

public setFragment(int|null $fragment) : void
Parameters
$fragment : int|null

setMolType()

public setMolType(string|null $molType) : void
Parameters
$molType : string|null

setOrganism()

public setOrganism(array<string|int, mixed>|null $organism) : void
Parameters
$organism : array<string|int, mixed>|null

setPrimAcc()

public setPrimAcc(string $primAcc) : void
Parameters
$primAcc : string

setSeqLength()

public setSeqLength(int|null $seqLength) : void
Parameters
$seqLength : int|null

setSequence()

public setSequence(string $sequence) : void
Parameters
$sequence : string

setSource()

public setSource(string|null $source) : void
Parameters
$source : string|null

setStart()

public setStart(int|null $start) : void
Parameters
$start : int|null
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