Documentation

InvalidSequenceException extends InvalidArgumentException
in package

Amelaye

BioPHP

Domain

Sequence

ValueObject

Class InvalidSequenceException

invalidSymbol() : InvalidSequenceException: Builds the exception raised when a symbol does not belong to the alphabet of the value object.
unsupportedMolType() : InvalidSequenceException: Builds the exception raised when a molecule type cannot be mapped to a value object.

Builds the exception raised when a symbol does not belong to the alphabet of the value object.


    public
            static        invalidSymbol(string $sMolType, string $sSymbol, int $iPosition) : InvalidSequenceException

$sMolType : string: The molecule type of the rejected value object (DNA, RNA, PROTEIN)
$sSymbol : string: The offending symbol
$iPosition : int: Zero-based position of the offending symbol

Builds the exception raised when a molecule type cannot be mapped to a value object.


    public
            static        unsupportedMolType(string $sMolType) : InvalidSequenceException