OrfFinderInterface
in
Interface OrfFinderInterface - finds every open reading frame across all six reading frames (three forward, three reverse) of a DNA sequence.
Tags
Table of Contents
Methods
- findOrfs() : array<string|int, OpenReadingFrame>
Methods
findOrfs()
public
findOrfs(DnaSequence $oSequence[, int $iMinimumProteinLength = 1 ][, int $iGeneticCode = 1 ]) : array<string|int, OpenReadingFrame>
Parameters
- $oSequence : DnaSequence
- $iMinimumProteinLength : int = 1
-
In amino acids, stop codon excluded
- $iGeneticCode : int = 1
-
An NCBI genetic code table id, 1 (standard) by default