CaiResult
in package
FinalYes
The score is the geometric mean of relative synonymous codon usage across every SCORED codon of the coding sequence, ranging from just above 0 (uses almost nothing but rare codons) to 1 (uses the most frequent codon for every amino acid). codonsScored is how many codons that geometric mean was actually taken over, after excluding stop codons and every amino acid with no synonym (Met, Trp under the standard genetic code) - useful to judge how statistically meaningful the score is for a short coding sequence.
Class CaiResult
Tags
Table of Contents
Properties
- $codonsScored : int
- $score : float
Methods
- __construct() : mixed
- CaiResult constructor.
- getCodonsScored() : int
- getScore() : float
Properties
$codonsScored
private
int
$codonsScored
$score
private
float
$score
Methods
__construct()
CaiResult constructor.
public
__construct(float $fScore, int $iCodonsScored) : mixed
Parameters
- $fScore : float
- $iCodonsScored : int
getCodonsScored()
public
getCodonsScored() : int
Return values
intgetScore()
public
getScore() : float