CodonUsageTableBuilder
in package
implements
CodonUsageTableBuilderInterface
Pure counting, no genetic code involved : which codons are synonymous with each other is CodonAdaptationIndexCalculator's concern when the table is later used, not this builder's. Only complete trailing codons are counted, the same convention CodonAdaptationIndexCalculator already uses when scoring a coding sequence.
Class CodonUsageTableBuilder
Tags
Table of Contents
Interfaces
- CodonUsageTableBuilderInterface
- Interface CodonUsageTableBuilderInterface - builds a CodonUsageTable by counting codon occurrences across a set of real coding sequences (typically the highly expressed genes of a host organism).
Methods
Methods
build()
public
build(array<string|int, DnaSequence> $aCodingSequences) : CodonUsageTable
Parameters
- $aCodingSequences : array<string|int, DnaSequence>