GeneticsFunctions
in package
Class NucleotidsManager
Tags
Table of Contents
Methods
- CountACGT() : int
- Will count number of A, C, G and T bases in the sequence
- CountCG() : int
- CountYRWSKMDVHB() : int
- Will count number of degenerate nucleotides (Y, R, W, S, K, MD, V, H and B) in the sequence
- CreateInversion() : string
- Returns the reverse complement of a sequence, in upper case
- RemoveNonCodingProt() : string
- Removes non-coding characters
Methods
CountACGT()
Will count number of A, C, G and T bases in the sequence
public
static CountACGT(string $sSequence) : int
Parameters
- $sSequence : string
-
is the sequence
Tags
Return values
intCountCG()
public
static CountCG(mixed $c) : int
Parameters
- $c : mixed
Tags
Return values
intCountYRWSKMDVHB()
Will count number of degenerate nucleotides (Y, R, W, S, K, MD, V, H and B) in the sequence
public
CountYRWSKMDVHB(string $c) : int
Parameters
- $c : string
Tags
Return values
intCreateInversion()
Returns the reverse complement of a sequence, in upper case
public
static CreateInversion(mixed $sSequence, mixed $dnaComplements) : string
Parameters
- $sSequence : mixed
- $dnaComplements : mixed
Return values
stringRemoveNonCodingProt()
Removes non-coding characters
public
static RemoveNonCodingProt(string $sSequence) : string
Parameters
- $sSequence : string