__construct() __construct(\Amelaye\BioPHP\Api\Interfaces\NucleotidApiAdapter $nucleotidApi) : mixed OligosManager constructor. Parameters \Amelaye\BioPHP\Api\Interfaces\NucleotidApiAdapter $nucleotidApi Returns mixed —
findOligos2BasesLong() findOligos2BasesLong(mixed $oligos_1step) : mixed For oligos 2 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos3BasesLong() findOligos3BasesLong(mixed $oligos_1step) : mixed For oligos 3 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos4BasesLong() findOligos4BasesLong(mixed $oligos_1step) : mixed For oligos 4 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos5BasesLong() findOligos5BasesLong(mixed $oligos_1step) : mixed For oligos 5 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos6BasesLong() findOligos6BasesLong(mixed $oligos_1step) : mixed For oligos 6 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos7BasesLong() findOligos7BasesLong(mixed $oligos_1step) : mixed For oligos 7 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos8BasesLong() findOligos8BasesLong(mixed $oligos_1step) : mixed For oligos 8 bases long Parameters mixed $oligos_1step Returns mixed —
findOligos() findOligos(string $sSequence, int $iOligoLen) : array Compute frequency of oligonucleotides with length $iOligoLen for sequence $sSequence Parameters string $sSequence int $iOligoLen Throws \Exception Returns array —
findZScore() findZScore(mixed $oligos2, mixed $oligos3, mixed $oligos4) : array COMPUTE Z-SCORES FOR TETRANUCLEOTIDES Parameters mixed $oligos2 mixed $oligos3 mixed $oligos4 Returns array —