SemiGlobalAlignerInterface.php
Semi-global (overlap) pairwise sequence alignment Interface Freely inspired by BioPHP's project biophp.org Created 30 September 2026 Last modified 8 October 2026
Table of Contents
Interfaces
- SemiGlobalAlignerInterface
- Interface SemiGlobalAlignerInterface - aligns two sequences without penalizing gaps at either end of either sequence, so a short sequence fully contained in a longer one (a primer inside a vector, an overlap between two fragments to assemble) scores as if the longer sequence's untouched flanks were never there.