SimpleMatchMismatchScoring.php
Flat match/mismatch substitution scoring Freely inspired by BioPHP's project biophp.org Created 30 September 2026 Last modified 2 October 2026
Table of Contents
Classes
- SimpleMatchMismatchScoring
- Awards a fixed score for identical symbols and another fixed score for anything else, case insensitive. Suitable for DNA and RNA, and usable as a crude default for amino acids when no substitution matrix is available.