ParsePrositeManager.php
PROSITE motif database parsing Freely inspired by BioPHP's project biophp.org Created 12 August 2026 Last modified 12 September 2026
Table of Contents
Classes
- ParsePrositeManager
- Class ParsePrositeManager A PROSITE entry describes a motif (pattern, or matrix/profile), not an annotated sequence, so - like ParsePdbManager - this class does not reuse the Sequence/Feature entities of ParseDbAbstractManager. It uses the same 2-char-tag/3-space layout as EMBL and Swiss-Prot, so multi-line fields are read with the same lookahead approach as ParseEmblManager. The MA (matrix) field, which Legacy/motif.inc.php itself only half-implemented (buggy 3-level nesting), is kept as a raw string here rather than ported as-is.