CodonUsageTableBuilder.php
Builds a CodonUsageTable by counting codons across real coding sequences Freely inspired by BioPHP's project biophp.org Created 30 September 2026 Last modified 8 October 2026
Table of Contents
Classes
- CodonUsageTableBuilder
- Pure counting, no genetic code involved : which codons are synonymous with each other is CodonAdaptationIndexCalculator's concern when the table is later used, not this builder's. Only complete trailing codons are counted, the same convention CodonAdaptationIndexCalculator already uses when scoring a coding sequence.