CodonUsageTable.php
Immutable value object wrapping a reference codon usage table Freely inspired by BioPHP's project biophp.org Created 30 September 2026 Last modified 2 October 2026
Table of Contents
Classes
- CodonUsageTable
- Holds raw codon observation counts from a reference gene set (typically the highly expressed genes of a host organism), keyed by codon in DNA notation. This is deliberately just a validated data carrier : it knows nothing about which codons are synonymous with each other, since that grouping comes from the genetic code, not from this table, and is CodonAdaptationIndexCalculator's concern.