Documentation

Files

A

• AbstractMolecularSequence.php
• AbstractNucleicSequence.php
• Accession.php
• AmelayeBioPHPExtension.php
• AminoAcidSequence.php
• AminoApi.php
• AminoApiAdapter.php
• AminoDTO.php
• Author.php

B

• Bioapi.php

C

• Collection.php
• CollectionElement.php
• Configuration.php

D

• DatabaseInterface.php
• DatabaseManager.php
• DatabaseParserFactory.php
• DatabaseReaderFactory.php
• DatabaseRecorderFactory.php
• DnaSequence.php

E

• ElementApi.php
• ElementApiAdapter.php
• ElementDTO.php
• EntrezReference.php
• Enzyme.php
• ExpasyDisease.php

F

• Feature.php
• FormatsTrait.php

G

• GbSequence.php
• GeneticsFunctions.php
• GenomeReference.php

I

• InvalidSequenceException.php

K

• Keyword.php

M

• MathematicsFunctions.php
• MolecularSequenceFactory.php

N

• NucleotidApi.php
• NucleotidApiAdapter.php
• NucleotidDTO.php

O

• OligosInterface.php
• OligosManager.php

P

• PKApi.php
• PKApiAdapter.php
• PKDTO.php
• Pam250MatrixDigitApi.php
• Pam250MatrixDigitApiAdapter.php
• Pam250MatrixDigitDTO.php
• ParseAaindexManager.php
• ParseBlocksManager.php
• ParseDatabaseInterface.php
• ParseDbAbstractManager.php
• ParseEmblManager.php
• ParseEntrezManager.php
• ParseEpdManager.php
• ParseExpasyEnzymeManager.php
• ParseGenbankManager.php
• ParseGenomeManager.php
• ParseHgbaseManager.php
• ParseKeggAbstractManager.php
• ParseKeggCompoundManager.php
• ParseKeggEnzymeManager.php
• ParseKeggGenomeManager.php
• ParseKeggOrthologManager.php
• ParseKeggReactionManager.php
• ParseNcbiLitManager.php
• ParsePdbManager.php
• ParsePdbstrManager.php
• ParsePirManager.php
• ParsePmdManager.php
• ParsePrfManager.php
• ParsePrintsManager.php
• ParseProdomManager.php
• ParsePrositeManager.php
• ParseSwissprotManager.php
• ParseTransfacAbstractManager.php
• ParseTransfacCellManager.php
• ParseTransfacClassManager.php
• ParseTransfacFactorManager.php
• ParseTransfacGeneManager.php
• ParseTransfacMatrixManager.php
• ParseTransfacSiteManager.php
• ParseUnigeneManager.php
• PdbAtom.php
• PdbHelix.php
• PdbSheet.php
• PrositeDbRef.php
• Protein.php
• ProteinInterface.php
• ProteinManager.php
• ProteinReductionApi.php
• ProteinReductionApiAdapter.php
• ProteinReductionDTO.php

R

• Reference.php
• RestrictionEnzymeInterface.php
• RestrictionEnzymeManager.php
• RnaSequence.php

S

• Sequence.php
• SequenceAlignmentInterface.php
• SequenceAlignmentManager.php
• SequenceBuilder.php
• SequenceInterface.php
• SequenceManager.php
• SequenceMatchInterface.php
• SequenceMatchManager.php
• SequenceTrait.php
• SpDatabank.php
• SrcForm.php
• SubMatrix.php

T

• TmBaseStackingApi.php
• TmBaseStackingApiAdapter.php
• TmBaseStackingDTO.php
• TripletApi.php
• TripletApiAdapter.php
• TripletDTO.php
• TripletSpecieApi.php
• TripletSpecieApiAdapter.php
• TripletSpecieDTO.php
• TypeIIEndonucleaseApi.php
• TypeIIEndonucleaseApiAdapter.php
• TypeIIEndonucleaseDTO.php
• TypeIIbEndonucleaseApi.php
• TypeIIbEndonucleaseApiAdapter.php
• TypeIIbEndonucleaseDTO.php
• TypeIIsEndonucleaseApi.php
• TypeIIsEndonucleaseApiAdapter.php
• TypeIIsEndonucleaseDTO.php

V

• VendorApi.php
• VendorApiAdapter.php
• VendorDTO.php
• VendorLinkApi.php
• VendorLinkApiAdapter.php
• VendorLinkDTO.php