Interfaces
Table of Contents
Interfaces
- NeighborJoiningInterface
- Interface NeighborJoiningInterface - builds an unrooted phylogenetic tree from a DistanceMatrix
using the Saitou & Nei (1987) neighbor-joining algorithm.
- NewickReaderInterface
- Interface NewickReaderInterface - parses a Newick string into a PhylogeneticNode tree. Only one
tree per call is supported ; a file holding several trees, one per line, is read by calling read()
once per line.
- UpgmaTreeBuilderInterface
- Interface UpgmaTreeBuilderInterface - builds a rooted, ultrametric tree from a DistanceMatrix
using UPGMA (average linkage clustering).