compDNA() compDNA(string $sSequence) : string Returns complement of sequence $sSequence Parameters string $sSequence Throws \Exception Returns string
compRNA() compRNA(string $sSequence) : string Returns complement of RNA sequence Parameters string $sSequence Throws \Exception Returns string
revCompDNA() revCompDNA(string $sSequence) : string Will yield the Reverse complement of a DNA sequence. Allows degenerated nucleotides Parameters string $sSequence is the sequence Throws \Exception Returns string
revCompRNA() revCompRNA(string $sSequence) : string Will yield the Reverse complement of a RNA sequence. Allows degenerated nucleotides Parameters string $sSequence is the sequence Throws \Exception Returns string
cleanSequence() cleanSequence( $sSequence, $sMolType) : boolean Check if characters outside our 20-letter amino alphabet is included in the sequence. If there are unknown characters, then do not compute molwt and instead return FALSE. Parameters $sSequence $sMolType Returns boolean