__construct() __construct(\Amelaye\BioPHP\Api\Interfaces\NucleotidApiAdapter $nucleotidApi) : mixed OligosManager constructor. Parameters \Amelaye\BioPHP\Api\Interfaces\NucleotidApiAdapter $nucleotidApi Returns mixed
findOligos2BasesLong() findOligos2BasesLong( $oligos_1step) : mixed For oligos 2 bases long Parameters $oligos_1step Returns mixed
findOligos3BasesLong() findOligos3BasesLong( $oligos_1step) : mixed For oligos 3 bases long Parameters $oligos_1step Returns mixed
findOligos4BasesLong() findOligos4BasesLong( $oligos_1step) : mixed For oligos 4 bases long Parameters $oligos_1step Returns mixed
findOligos5BasesLong() findOligos5BasesLong( $oligos_1step) : mixed For oligos 5 bases long Parameters $oligos_1step Returns mixed
findOligos6BasesLong() findOligos6BasesLong( $oligos_1step) : mixed For oligos 6 bases long Parameters $oligos_1step Returns mixed
findOligos7BasesLong() findOligos7BasesLong( $oligos_1step) : mixed For oligos 7 bases long Parameters $oligos_1step Returns mixed
findOligos8BasesLong() findOligos8BasesLong( $oligos_1step) : mixed For oligos 8 bases long Parameters $oligos_1step Returns mixed
findOligos() findOligos(string $sSequence, int $iOligoLen) : array Compute frequency of oligonucleotides with length $iOligoLen for sequence $sSequence Parameters string $sSequence int $iOligoLen Throws \Exception Returns array
findZScore() findZScore( $oligos2, $oligos3, $oligos4) : array COMPUTE Z-SCORES FOR TETRANUCLEOTIDES Parameters $oligos2 $oligos3 $oligos4 Returns array